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Abstract

Effect of single nucleotide polymorphism (SNP) in splicing site of the LPAR1 (lysophosphatidic acid receptor 1) gene on selected quality traits was investigated in frozen-thawed semen of Holstein-Friesian bulls. Splicing mutation A/G in the LPAR1 gene (rs43581860) was identified in 120 Holstein-Friesian bulls using PCR-RFLP technique (Hph I). Heterozygotes AG were the most frequent (37.5%) compared with AA (30.8%) and GG (31.7%) homozygotes. Observed differences in total motility (TM), sperm membrane integrity (SYBR-14/PI) and ATP content were significant between homozygotes AA or GG and heterozygotes AG. For all three traits disadvantageous effect of heterozygotes AG was detected. This means that LPAR1 splicing mutation has significant effect on semen quality and should be considered as a new marker of semen quality in Holstein-Friesian bulls.
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Abstract

A new species, Chenophila nanseni sp. n., collected from covert quills of the barnacle goose Branta leucopsis (Anseriformes: Anatidae) in Svalbard (Spitsbergen) is described and female polymorphism is recorded in this species. In syringophilids this phenomenon was known only for representatives of the genus Stibarokris. The new species differs from the similar Ch. platyrhynchos by following features: in females of Ch. nanseni the anterior margin of the propodonotal shield is flat (vs. concave in Ch. platyrhynchos) and the lengths of idiosomal setae si, f2 and ag3 in Ch. nanseni are distinctly shorter than in Ch. plathyrynchos.
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Abstract

Salt stress causes severe reduction in the growth and yield of rice plants. The ability to maintain cellular ion homeostasis is of importance to help the plant survive under salt stress. Salt overly sensitive 1 (SOS1), a plasma membrane Na+/H+ antiporter, has been proven to play critical roles in Na+ exclusion out of the cell, hence contributing to salt tolerance in plants. In this study, we analyzed the natural nucleotide polymorphisms occuring within the entire coding sequence as well as the upstream region of the OsSOS1 gene by comparing the sequences of two contrasting rice genotypes, namely, Nipponbare (salt-sensitive) and Pokkali (salt-resistant). In total, six nucleotide polymorphisms were identified in the coding sequence, and 44 nucleotide substitutions, 225-bp-insertion and 65-bp-deletion were observed in the upstream region of the OsSOS1 gene. Futher in silico analysis revealed that two out of six nucleotide polymorphisms in the coding sequence were non-synonymous (A1600G, G2204A) which led to two amino acid substitutions (T534A, S735N, respectively) positioned in the C-terminal domain of OsSOS1 transporter, but caused no effect on protein properties. In the upstream region of OsSOS1 gene, 44 single nucleotide polymorphisms and two INDELs were identified, in which nucleotide substitutions at position -1392, -1389, -822, -583, +57 and an insertion at position -1035 caused change in cis-regulatory elements. Analysis of OsSOS1 expression revealed that salt induced the expression of the gene in the roots, but not in the leaves in both investigated rice cultivars.
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Abstract

We used simple sequence repeat markers and 25 morphological characters to characterize 18 Tunisian fig (Ficus carica L.) cultivars. Morphological traits suggested a high level of variation in the germplasm. Principal component analysis (PCA) differentiated the studied cultivars. In the derived dendrogram the cultivars clustered independently of their geographical origin and sex of trees. Simple sequence repeat (SSR) markers were used to compare genetic polymorphism with the observed phenotypic variation. Using six microsatellite primers, 39 alleles and 59 genotypes were identified. The high values of polymorphism information content (PIC), ranging from 0.67 to 0.85, confirmed the effectiveness of microsatellite analysis for determining molecular polymorphism and characterizing the studied cultivars. Multilocus genotyping unambiguously distinguished all the cultivars. The ability of each type of feature to differentiate cultivars of this crop is discussed.
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